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1

[Lecture Notes in Computer Science] Advances in Bioinformatics and Computational Biology Volume 7409 || A Comparative Analysis of Public Ligand Databases Based on Molecular Descriptors

de Souto, Marcilio C., Kann, Maricel G.

Year:

2012

Language:

english

File:

PDF, 175 KB

english, 2012

2

Chapter 5: Network Biology Approach to Complex Diseases

Cho, Dong-Yeon, Kim, Yoo-Ah, Przytycka, Teresa M., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 394 KB

english, 2012

3

Chapter 2: Data-Driven View of Disease Biology

Greene, Casey S., Troyanskaya, Olga G., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

4

Optimization of a new score function for the detection of remote homologs

Maricel Kann, Bin Qian, Richard A. Goldstein

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 113 KB

english, 2000

5

Performance evaluation of a new algorithm for the detection of remote homologs with sequence comparison

Maricel G. Kann, Richard A. Goldstein

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2002

Language:

english

File:

PDF, 244 KB

english, 2002

6

Predicting protein domain interactions from coevolution of conserved regions

Maricel G. Kann, Raja Jothi, Praveen F. Cherukuri, Teresa M. Przytycka

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2007

Language:

english

File:

PDF, 506 KB

english, 2007

7

Domain landscapes of somatic mutations in cancer

Nehrt, Nathan L, Peterson, Thomas A, Park, DoHwan, Kann, Maricel G

Journal:

Year:

2012

Language:

english

File:

PDF, 2.58 MB

english, 2012

8

Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree

Maricel G. Kann, Benjamin A. Shoemaker, Anna R. Panchenko, Teresa M. Przytycka

Journal:

Journal of Molecular Biology

Year:

2009

Language:

english

File:

PDF, 1.04 MB

english, 2009

9

[Lecture Notes in Computer Science] Advances in Bioinformatics and Computational Biology Volume 7409 || Transposition Diameter and Lonely Permutations

de Souto, Marcilio C., Kann, Maricel G.

Year:

2012

Language:

english

File:

PDF, 249 KB

english, 2012

10

A mutation-centric approach to identifying pharmacogenomic relations in text

Bastien Rance, Emily Doughty, Dina Demner-Fushman, Maricel G. Kann, Olivier Bodenreider

Journal:

Journal of Biomedical Informatics

Year:

2012

Language:

english

File:

PDF, 256 KB

english, 2012

11

Introduction to Translational Bioinformatics Collection

Altman, Russ B., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 159 KB

english, 2012

12

A protein domain-centric approach for the comparative analysis of human and yeast phenotypically relevant mutations

Thomas A Peterson, DoHwan Park, Maricel G Kann

Journal:

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

13

Towards Precision Medicine: Advances in Computational Approaches for the Analysis of Human Variants

Peterson, Thomas A., Doughty, Emily, Kann, Maricel G.

Journal:

Journal of Molecular Biology

Year:

2013

Language:

english

File:

PDF, 2.04 MB

english, 2013

14

[Lecture Notes in Computer Science] Advances in Bioinformatics and Computational Biology Volume 7409 ||

de Souto, Marcilio C., Kann, Maricel G.

Year:

2012

Language:

english

File:

PDF, 6.98 MB

english, 2012

15

Histone structure and nucleosome stability

Mariño-Ramírez, Leonardo, Kann, Maricel G, Shoemaker, Benjamin A, Landsman, David

Journal:

Expert Review of Proteomics

Year:

2005

Language:

english

File:

PDF, 217 KB

english, 2005

16

[IEEE 2012 IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences (ICCABS) - Las Vegas, NV, USA (2012.02.23-2012.02.25)] 2012 IEEE 2nd International Conference on Computational Advances in Bio and medical Sciences (ICCABS) - Invited: A protein domain-centric approach to translational bioinformatics

Kann, Maricel G.

Year:

2012

Language:

english

File:

PDF, 57 KB

english, 2012

17

[Lecture Notes in Computer Science] Advances in Bioinformatics and Computational Biology Volume 7409 || Phylogenetic Distance Computation Using CUDA

de Souto, Marcilio C., Kann, Maricel G.

Year:

2012

Language:

english

File:

PDF, 190 KB

english, 2012

18

[Lecture Notes in Computer Science] Advances in Bioinformatics and Computational Biology Volume 7409 || Evaluating Correlation Coefficients for Clustering Gene Expression Profiles of Cancer

de Souto, Marcilio C., Kann, Maricel G.

Year:

2012

Language:

english

File:

PDF, 216 KB

english, 2012

19

Chapter 7: Pharmacogenomics

Karczewski, Konrad J., Daneshjou, Roxana, Altman, Russ B., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.38 MB

english, 2012

20

Chapter 17: Bioimage Informatics for Systems Pharmacology

Li, Fuhai, Yin, Zheng, Jin, Guangxu, Zhao, Hong, Wong, Stephen T. C., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 12.20 MB

english, 2013

21

Chapter 3: Small Molecules and Disease

Wishart, David S., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

22

Chapter 8: Biological Knowledge Assembly and Interpretation

Kim, Ju Han, Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 6.49 MB

english, 2012

23

Chapter 14: Cancer Genome Analysis

Vazquez, Miguel, de la Torre, Victor, Valencia, Alfonso, Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 665 KB

english, 2012

24

Chapter 10: Mining Genome-Wide Genetic Markers

Zhang, Xiang, Huang, Shunping, Zhang, Zhaojun, Wang, Wei, Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 392 KB

english, 2012

25

Chapter 12: Human Microbiome Analysis

Morgan, Xochitl C., Huttenhower, Curtis, Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 541 KB

english, 2012

26

Chapter 13: Mining Electronic Health Records in the Genomics Era

Denny, Joshua C., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 592 KB

english, 2012

27

Chapter 11: Genome-Wide Association Studies

Bush, William S., Moore, Jason H., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 517 KB

english, 2012

28

Chapter 1: Biomedical Knowledge Integration

Payne, Philip R. O., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 839 KB

english, 2012

29

Chapter 9: Analyses Using Disease Ontologies

Shah, Nigam H., Cole, Tyler, Musen, Mark A., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 5.57 MB

english, 2012

30

Chapter 16: Text Mining for Translational Bioinformatics

Cohen, K. Bretonnel, Hunter, Lawrence E., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 193 KB

english, 2013

31

Chapter 6: Structural Variation and Medical Genomics

Raphael, Benjamin J., Lewitter, Fran, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 1.14 MB

english, 2012

32

Chapter 4: Protein Interactions and Disease

Gonzalez, Mileidy W., Kann, Maricel G., Lewitter, Fran

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 978 KB

english, 2012

33

Protein-Protein Interactions in a Crowded Environment: An Analysis via Cross-Docking Simulations and Evolutionary Information

Lopes, Anne, Sacquin-Mora, Sophie, Dimitrova, Viktoriya, Laine, Elodie, Ponty, Yann, Carbone, Alessandra, Kann, Maricel

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 5.27 MB

english, 2013

34

[ACM Press the fourth annual international conference - Tokyo, Japan (2000..-..)] Proceedings of the fourth annual international conference on Computational molecular biology - RECOMB '00 - Optimizing for success

Kann, Maricel, Goldstein, Richard A.

Year:

2000

Language:

english

File:

PDF, 398 KB

english, 2000

35

Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants

Regan, Kelly, Wang, Kanix, Doughty, Emily, Li, Haiquan, Li, Jianrong, Lee, Younghee, Kann, Maricel G, Lussier, Yves A

Journal:

Journal of the American Medical Informatics Association

Year:

2012

Language:

english

File:

PDF, 1.07 MB

english, 2012

36

Mac-1 Regulates IL-13 Activity in Macrophages by Directly Interacting with IL-13Rα1

Cao, Chunzhang, Zhao, Juanjuan, Doughty, Emily K., Migliorini, Mary, Strickland, Dudley K., Kann, Maricel G., Zhang, Li

Journal:

Journal of Biological Chemistry

Year:

2015

Language:

english

File:

PDF, 1.28 MB

english, 2015

37

Incorporating molecular and functional context into the analysis and prioritization of human variants associated with cancer

Peterson, Thomas A, Nehrt, Nathan L, Park, DoHwan, Kann, Maricel G

Journal:

Journal of the American Medical Informatics Association

Year:

2012

Language:

english

File:

PDF, 331 KB

english, 2012

38

Guest Editorial for Special Section on BSB 2012

de Souto, Marcilio C.P., Kann, Maricel

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2013

Language:

english

File:

PDF, 69 KB

english, 2013

39

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (4 – 8 January 2016)] Biocomputing 2016 - INNOVATIVE APPROACHES TO COMBINING GENOTYPE, PHENOTYPE, EPIGENETIC, AND EXPOSURE DATA FOR PRECISION DIAGNOSTICS

HAENDEL, MELISSA A., KANN, MARICEL G., WASHINGTON, NICOLE L.

Language:

english

File:

PDF, 554 KB

english

40

Regulatory Single Nucleotide Variant Predictor (RSVP) Increases Predictive Performance of Functional Regulatory Variants

Peterson, Thomas A., Mort, Matthew, Cooper, David N., Radivojac, Predrag, Kann, Maricel G., Mooney, Sean D.

Journal:

Year:

2016

Language:

english

File:

PDF, 813 KB

english, 2016

41

Small-angle X-ray scattering method to characterize molecular interactions: Proof of concept

Allec, Nicholas, Choi, Mina, Yesupriya, Nikhil, Szychowski, Brian, White, Michael R., Kann, Maricel G., Garcin, Elsa D., Daniel, Marie-Christine, Badano, Aldo

Journal:

Scientific Reports

Year:

2015

Language:

english

File:

PDF, 1.61 MB

english, 2015

42

Recruitment of Tiam1 to Semaphorin 4D Activates Rac and Enhances Proliferation, Invasion, and Metastasis in Oral Squamous Cell Carcinoma

Zhou, Hua, Kann, Maricel G., Mallory, Emily K., Yang, Ying-Hua, Bugshan, Amr, Binmadi, Nada O., Basile, John R.

Journal:

Year:

2017

Language:

english

File:

PDF, 1.06 MB

english, 2017

43

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (5 – 9 January 2009)] Biocomputing 2009 - MOLECULAR BIOINFORMATICS FOR DISEASE – SESSION INTRODUCTION

LUSSIER, YVES A., LEE, YOUNGHEE, RADIVOJAC, PREDRAG, OFRAN, YANAY, BUTTE, ATUL, KANN, MARICEL

Language:

english

File:

PDF, 541 KB

english

44

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Maui, Hawaii (3 – 7 January 2006)] Biocomputing 2006 - PROTEIN INTERACTIONS AND DISEASE: SESSION INTRODUCTION

KANN, MARICEL, OFRAN, YANAY, PUNTA, MARCO, RADIVOJAC, PREDRAG

Language:

english

File:

PDF, 180 KB

english

45

Empirical null estimation using zero-inflated discrete mixture distributions and its application to protein domain data

Gauran, Iris Ivy M., Park, Junyong, Lim, Johan, Park, DoHwan, Zylstra, John, Peterson, Thomas, Kann, Maricel, Spouge, John L.

Journal:

Year:

2017

Language:

english

File:

PDF, 553 KB

english, 2017

46

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (3 – 7 January 2013)] Biocomputing 2013 - MODELING CELL HETEROGENEITY: FROM SINGLE-CELL VARIATIONS TO MIXED CELLS

BATCHELOR, ERIC, KANN, MARICEL G., PRZYTYCKA, TERESA M., RAPHAEL, BENJAMIN J., WOJTOWICZ, DAMIAN

Language:

english

File:

PDF, 594 KB

english

47

[WORLD SCIENTIFIC Proceedings of the Pacific Symposium - Kohala Coast, Hawaii, USA (3 – 7 January 2018)] Biocomputing 2018 - Reading Between the Genes: Computational Models to Discover Function from Noncoding DNA

Lussier, Yves A., Berghout, Joanne, Vitali, Francesca, Ramos, Kenneth S., Kann, Maricel, Moore, Jason H.

Language:

english

File:

PDF, 612 KB

english

48

Network perturbation by recurrent regulatory variants in cancer

Jang, Kiwon, Kim, Kwoneel, Cho, Ara, Lee, Insuk, Choi, Jung Kyoon, Kann, Maricel G

Journal:

PLoS Computational Biology

Year:

2017

Language:

english

File:

PDF, 2.39 MB

english, 2017

49

Pathway networks generated from human disease phenome

Cirincione, Ann G., Clark, Kaylyn L., Kann, Maricel G.

Journal:

BMC Medical Genomics

Year:

2018

Language:

english

File:

PDF, 1.63 MB

english, 2018

50

Putting benchmarks in their rightful place: The heart of computational biology

Peters, Bjoern, Brenner, Steven E., Wang, Edwin, Slonim, Donna, Kann, Maricel G., Editor, An

Journal:

PLoS Computational Biology

Year:

2018

Language:

english

File:

PDF, 226 KB

english, 2018